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ASM346274v1

Organism name:
Bacteroides stercoris (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: AF16-30
BioSample:
SAMN09734311
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003462745.1 (latest)
RefSeq assembly accession:
GCF_003462745.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QRXZ01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1921751 [UID] 7292548 [GenBank] 7349538 [RefSeq]

See Genome Information for Bacteroides stercoris

There are 202 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/04/2018 01:40:39
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,419
CDS (total)::3,361
Genes (coding)::3,237
CDS (coding)::3,237
Genes (RNA)::58
rRNAs::1, 1 (5S, 16S)
complete rRNAs::1, 1 (5S, 16S)
tRNAs::54
ncRNAs::2
Pseudo Genes (total)::124
Pseudo Genes (ambiguous residues)::10 of 124
Pseudo Genes (frameshifted)::67 of 124
Pseudo Genes (incomplete)::51 of 124
Pseudo Genes (internal stop)::24 of 124
Pseudo Genes (multiple problems)::25 of 124
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,997,770
Total ungapped length3,997,204
Gaps between scaffolds0
Number of scaffolds81
Scaffold N50138,129
Scaffold L508
Number of contigs121
Contig N50109,800
Contig L5010
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)81

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,997,770813,997,204138,129400

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacteroides stercorisBacteroides stercoris

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000154525.1Bacteroides stercoris ATCC 43183suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000154525.1Bacteroides stercorissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.3874.8174.59
Best-match type98.3874.8174.59

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna