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ASM346275v1

Organism name:
Limosilactobacillus fermentum (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: AF16-22LB
BioSample:
SAMN09734308
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003462755.1 (latest)
RefSeq assembly accession:
GCF_003462755.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QRYA01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1921771 [UID] 7292558 [GenBank] 7351198 [RefSeq]

See Genome Information for Limosilactobacillus fermentum

There are 341 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/04/2018 00:39:35
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,024
CDS (total)::1,963
Genes (coding)::1,841
CDS (coding)::1,841
Genes (RNA)::61
rRNAs::1, 2, 1 (5S, 16S, 23S)
complete rRNAs::1, 1 (5S, 23S)
partial rRNAs::2 (16S)
tRNAs::54
ncRNAs::3
Pseudo Genes (total)::122
Pseudo Genes (ambiguous residues)::6 of 122
Pseudo Genes (frameshifted)::40 of 122
Pseudo Genes (incomplete)::69 of 122
Pseudo Genes (internal stop)::30 of 122
Pseudo Genes (multiple problems)::23 of 122
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,996,988
Total ungapped length1,996,550
Gaps between scaffolds0
Number of scaffolds104
Scaffold N5043,257
Scaffold L5016
Number of contigs128
Contig N5037,467
Contig L5017
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)104

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,996,9881041,996,55043,257240

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Limosilactobacillus fermentumLimosilactobacillus fermentum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_005341425.1Limosilactobacillus fermentumtype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_005341425.1Limosilactobacillus fermentumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.1586.0190.13
Best-match type99.1586.0190.13

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna