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ASM346286v1

Organism name:
Phocaeicola vulgatus (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: AF16-11
BioSample:
SAMN09734303
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003462865.1 (latest)
RefSeq assembly accession:
GCF_003462865.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QRYD01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1921811 [UID] 7292658 [GenBank] 7347118 [RefSeq]

See Genome Information for Phocaeicola vulgatus

There are 1480 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/04/2018 01:37:37
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,642
CDS (total)::4,562
Genes (coding)::4,331
CDS (coding)::4,331
Genes (RNA)::80
rRNAs::3, 1, 1 (5S, 16S, 23S)
complete rRNAs::3, 1, 1 (5S, 16S, 23S)
tRNAs::72
ncRNAs::3
Pseudo Genes (total)::231
Pseudo Genes (ambiguous residues)::11 of 231
Pseudo Genes (frameshifted)::123 of 231
Pseudo Genes (incomplete)::107 of 231
Pseudo Genes (internal stop)::50 of 231
Pseudo Genes (multiple problems)::51 of 231
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,220,172
Total ungapped length5,219,862
Gaps between scaffolds0
Number of scaffolds149
Scaffold N5076,789
Scaffold L5021
Number of contigs180
Contig N5076,409
Contig L5021
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)149

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,220,1721495,219,86276,789310

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Phocaeicola vulgatusPhocaeicola vulgatus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000012825.1Phocaeicola vulgatus ATCC 8482suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000012825.1Phocaeicola vulgatussuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.1376.6277.45
Best-match type99.1376.6277.45

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna