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ASM346355v1

Organism name:
Bacteroides fragilis (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: CF01-8
BioSample:
SAMN09736660
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • RefSeq annotation failed
  • annotation fails completeness check
  • many frameshifted proteins
GenBank assembly accession:
GCA_003463555.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
QSDH01
Assembly method:
SPAdes v. 3.1.0
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
IonProton

IDs: 1922171 [UID] 7293378 [GenBank]

See Genome Information for Bacteroides fragilis

There are 1151 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/04/2018 05:08:10
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,571
CDS (total)::4,506
Genes (coding)::3,720
CDS (coding)::3,720
Genes (RNA)::65
rRNAs::5, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::4 (5S)
tRNAs::56
ncRNAs::2
Pseudo Genes (total)::786
Pseudo Genes (ambiguous residues)::0 of 786
Pseudo Genes (frameshifted)::705 of 786
Pseudo Genes (incomplete)::75 of 786
Pseudo Genes (internal stop)::52 of 786
Pseudo Genes (multiple problems)::44 of 786
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,044,825
Total ungapped length5,044,825
Number of contigs139
Contig N5096,938
Contig L5017
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)139

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,044,8251395,044,82596,93800

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacteroides fragilisBacteroides fragilis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000025985.1Bacteroides fragilis NCTC 9343type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000025985.1Bacteroides fragilistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.0184.6581.47
Best-match type99.0184.6581.47

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna