U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM346368v1

Organism name:
Parabacteroides sp. AM58-2XD (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: AM58-2XD
BioSample:
SAMN09736649
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_003463685.1 (latest)
RefSeq assembly accession:
GCF_003463685.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QSDP01
Assembly method:
SPAdes v. 3.1.0
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
IonProton

IDs: 1922221 [UID] 7293478 [GenBank] 8245818 [RefSeq]

See Genome Information for Parabacteroides sp. AM58-2XD

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/04/2018 06:00:57
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,075
CDS (total)::5,005
Genes (coding)::4,114
CDS (coding)::4,114
Genes (RNA)::70
rRNAs::6, 1, 2 (5S, 16S, 23S)
complete rRNAs::1, 1 (5S, 16S)
partial rRNAs::5, 2 (5S, 23S)
tRNAs::59
ncRNAs::2
Pseudo Genes (total)::891
Pseudo Genes (ambiguous residues)::0 of 891
Pseudo Genes (frameshifted)::786 of 891
Pseudo Genes (incomplete)::115 of 891
Pseudo Genes (internal stop)::32 of 891
Pseudo Genes (multiple problems)::40 of 891
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,397,923
Total ungapped length6,397,923
Number of contigs264
Contig N5050,385
Contig L5045
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)264

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,397,9232646,397,92350,38500

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Parabacteroides sp. AM58-2XDParabacteroides sp. AM58-2XD

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014287545.1Parabacteroides segnistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type97.5979.5869.69

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna