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ASM346378v1

  • Anomalous assembly.
Organism name:
Parabacteroides distasonis (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: AM54-10XD
BioSample:
SAMN09736632
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Assembly anomaly:
contaminated
Excluded from RefSeq:
  • contaminated
  • many frameshifted proteins
GenBank assembly accession:
GCA_003463785.1 (latest)
RefSeq assembly accession:
GCF_003463785.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QSDX01
Assembly method:
SPAdes v. 3.1.0
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
IonProton

IDs: 1922271 [UID] 7293588 [GenBank] 7665908 [RefSeq]

See Genome Information for Parabacteroides distasonis

There are 1007 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/04/2018 05:47:03
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,692
CDS (total)::4,613
Genes (coding)::3,759
CDS (coding)::3,759
Genes (RNA)::79
rRNAs::8, 5, 2 (5S, 16S, 23S)
complete rRNAs::1 (5S)
partial rRNAs::7, 5, 2 (5S, 16S, 23S)
tRNAs::62
ncRNAs::2
Pseudo Genes (total)::854
Pseudo Genes (ambiguous residues)::0 of 854
Pseudo Genes (frameshifted)::756 of 854
Pseudo Genes (incomplete)::91 of 854
Pseudo Genes (internal stop)::45 of 854
Pseudo Genes (multiple problems)::33 of 854
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,276,076
Total ungapped length5,275,739
Gaps between scaffolds0
Number of scaffolds113
Scaffold N50104,633
Scaffold L5015
Number of contigs114
Contig N50104,633
Contig L5015
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)113

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,276,0761135,275,739104,63310

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Parabacteroides distasonisParabacteroides distasonis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000012845.1Parabacteroides distasonis ATCC 8503suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000012845.1Parabacteroides distasonissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.5877.4084.87
Best-match type98.5877.4084.87

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna