U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM346382v1

Organism name:
Veillonella sp. AM51-8BH (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: AM51-8BH
BioSample:
SAMN09736631
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003463825.1 (latest)
RefSeq assembly accession:
GCF_003463825.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QSDY01
Assembly method:
SPAdes v. 3.1.0
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
IonProton

IDs: 1922291 [UID] 7293628 [GenBank] 7465058 [RefSeq]

See Genome Information for Veillonella sp. AM51-8BH

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/04/2018 05:03:17
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,885
CDS (total)::1,823
Genes (coding)::1,603
CDS (coding)::1,603
Genes (RNA)::62
rRNAs::3, 6, 3 (5S, 16S, 23S)
complete rRNAs::2, 1, 1 (5S, 16S, 23S)
partial rRNAs::1, 5, 2 (5S, 16S, 23S)
tRNAs::46
ncRNAs::4
Pseudo Genes (total)::220
Pseudo Genes (ambiguous residues)::0 of 220
Pseudo Genes (frameshifted)::200 of 220
Pseudo Genes (incomplete)::19 of 220
Pseudo Genes (internal stop)::6 of 220
Pseudo Genes (multiple problems)::5 of 220
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,006,151
Total ungapped length2,005,377
Gaps between scaffolds0
Number of scaffolds124
Scaffold N5028,599
Scaffold L5022
Number of contigs125
Contig N5028,599
Contig L5022
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)124

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,006,1511242,005,37728,59910

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Veillonella sp. AM51-8BHVeillonella sp. AM51-8BH

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_013393365.1Veillonella nakazawaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type94.3191.4787.44

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna