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Source database (GenBank or RefSeq) File type

ASM346388v1

Organism name:

Phocaeicola vulgatus (CFB group bacteria)

Taxonomy check:

Infraspecific name:

Strain: AM51-1

BioSample:

SAMN09736624

Submitter:

BGI

Date:

2018/09/06

Assembly type:

Assembly level:

Scaffold

Genome representation:

full

Excluded from RefSeq:

many frameshifted proteins

GenBank assembly accession:

GCA_003463885.1 (latest)

RefSeq assembly accession:

GCF_003463885.1 (suppressed)

RefSeq assembly and GenBank assembly identical:

yes

WGS Project:

QSEC01

Assembly method:

SPAdes v. 3.1.0

Expected final version:

yes

Genome coverage:

100x

Sequencing technology:

IonProton

IDs: 1922331 [UID] 7293698 [GenBank] 9058038 [RefSeq]

See Genome Information for Phocaeicola vulgatus

Pathogen Detection Resources

There are 1480 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_003463885.1	=	GCF_003463885.1	ASM346388v1	Scaffold	Latest GenBank, RefSeq suppressed

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::08/04/2018 06:10:12
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,500
CDS (total)::4,430
Genes (coding)::3,580
CDS (coding)::3,580
Genes (RNA)::70
rRNAs::1, 4, 1 (5S, 16S, 23S)
complete rRNAs::1, 1 (5S, 23S)
partial rRNAs::4 (16S)
tRNAs::62
ncRNAs::2
Pseudo Genes (total)::850
Pseudo Genes (ambiguous residues)::0 of 850
Pseudo Genes (frameshifted)::751 of 850
Pseudo Genes (incomplete)::114 of 850
Pseudo Genes (internal stop)::55 of 850
Pseudo Genes (multiple problems)::59 of 850
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	5,090,998
Total ungapped length	5,089,903
Gaps between scaffolds	0
Number of scaffolds	142
Scaffold N50	91,981
Scaffold L50	18
Number of contigs	145
Contig N50	91,981
Contig L50	18
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	142

	ANI	Query coverage	Subject coverage
Declared type	99.15	77.62	76.52
Best-match type	99.15	77.62	76.52

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ASM346388v1

See Genome Information for Phocaeicola vulgatus

Pathogen Detection Resources

There are 1480 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

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Taxonomy Check Data

Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result