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ASM346395v1

Organism name:
Bacteroides ovatus (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: AM50-10BH
BioSample:
SAMN09736619
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • annotation fails completeness check
  • many frameshifted proteins
GenBank assembly accession:
GCA_003463955.1 (latest)
RefSeq assembly accession:
GCF_003463955.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QSEG01
Assembly method:
SPAdes v. 3.1.0
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
IonProton

IDs: 1922361 [UID] 7293758 [GenBank] 9071838 [RefSeq]

See Genome Information for Bacteroides ovatus

There are 670 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/04/2018 06:32:58
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,042
CDS (total)::4,967
Genes (coding)::4,312
CDS (coding)::4,312
Genes (RNA)::75
rRNAs::5, 3, 6 (5S, 16S, 23S)
complete rRNAs::4 (5S)
partial rRNAs::1, 3, 6 (5S, 16S, 23S)
tRNAs::58
ncRNAs::3
Pseudo Genes (total)::655
Pseudo Genes (ambiguous residues)::0 of 655
Pseudo Genes (frameshifted)::589 of 655
Pseudo Genes (incomplete)::62 of 655
Pseudo Genes (internal stop)::37 of 655
Pseudo Genes (multiple problems)::28 of 655
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,278,096
Total ungapped length6,277,893
Gaps between scaffolds0
Number of scaffolds160
Scaffold N50109,270
Scaffold L5020
Number of contigs161
Contig N50109,270
Contig L5020
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)160

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,278,0961606,277,893109,27010

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacteroides ovatusBacteroides ovatus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000154125.1Bacteroides ovatus ATCC 8483suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000154125.1Bacteroides ovatussuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.1274.5672.44
Best-match type97.1274.5672.44

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna