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ASM346403v1

Organism name:
Bacteroides stercoris (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: AM49-4
BioSample:
SAMN09736614
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • annotation fails completeness check
  • many frameshifted proteins
GenBank assembly accession:
GCA_003464035.1 (latest)
RefSeq assembly accession:
GCF_003464035.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QSEJ01
Assembly method:
SPAdes v. 3.1.0
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
IonProton

IDs: 1922401 [UID] 7293838 [GenBank] 8245638 [RefSeq]

See Genome Information for Bacteroides stercoris

There are 202 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/04/2018 05:48:43
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,337
CDS (total)::3,273
Genes (coding)::2,473
CDS (coding)::2,473
Genes (RNA)::64
rRNAs::4, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::3 (5S)
tRNAs::56
ncRNAs::2
Pseudo Genes (total)::800
Pseudo Genes (ambiguous residues)::0 of 800
Pseudo Genes (frameshifted)::727 of 800
Pseudo Genes (incomplete)::77 of 800
Pseudo Genes (internal stop)::24 of 800
Pseudo Genes (multiple problems)::27 of 800
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,892,011
Total ungapped length3,892,011
Number of contigs102
Contig N5090,924
Contig L5013
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)102

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,892,0111023,892,01190,92400

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacteroides stercorisBacteroides stercoris

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000154525.1Bacteroides stercoris ATCC 43183suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000154525.1Bacteroides stercorissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.7177.7775.48
Best-match type98.7177.7775.48

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna