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ASM346404v1

Organism name:
Dorea sp. AM58-8 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: AM58-8
BioSample:
SAMN09736652
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003464045.1 (latest)
RefSeq assembly accession:
GCF_003464045.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QSDM01
Assembly method:
SPAdes v. 3.1.0
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
IonProton

IDs: 1922391 [UID] 7293818 [GenBank] 7358818 [RefSeq]

See Genome Information for Dorea sp. AM58-8

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/04/2018 04:53:42
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,095
CDS (total)::3,027
Genes (coding)::2,732
CDS (coding)::2,732
Genes (RNA)::68
rRNAs::2, 6, 6 (5S, 16S, 23S)
complete rRNAs::2, 1, 1 (5S, 16S, 23S)
partial rRNAs::5, 5 (16S, 23S)
tRNAs::50
ncRNAs::4
Pseudo Genes (total)::295
Pseudo Genes (ambiguous residues)::0 of 295
Pseudo Genes (frameshifted)::212 of 295
Pseudo Genes (incomplete)::84 of 295
Pseudo Genes (internal stop)::19 of 295
Pseudo Genes (multiple problems)::19 of 295
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,102,867
Total ungapped length3,102,511
Gaps between scaffolds0
Number of scaffolds61
Scaffold N50119,220
Scaffold L508
Number of contigs62
Contig N50119,220
Contig L508
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)61

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,102,867613,102,511119,22010

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Dorea sp. AM58-8Dorea sp. AM58-8

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_025567415.1Dorea ammoniilyticatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type97.4972.1283.09

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna