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ASM346416v1

  • Anomalous assembly.
Organism name:
Eubacterium sp. AM49-13BH (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: AM49-13BH
BioSample:
SAMN09736613
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Assembly anomaly:
contaminated
Excluded from RefSeq:
  • contaminated
GenBank assembly accession:
GCA_003464165.1 (latest)
RefSeq assembly accession:
GCF_003464165.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QSEK01
Assembly method:
SPAdes v. 3.1.0
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
IonProton

IDs: 1922461 [UID] 7293968 [GenBank] 7465598 [RefSeq]

See Genome Information for Eubacterium sp. AM49-13BH

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/04/2018 05:41:55
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,586
CDS (total)::2,519
Genes (coding)::2,301
CDS (coding)::2,301
Genes (RNA)::67
rRNAs::2, 6, 8 (5S, 16S, 23S)
complete rRNAs::2, 1 (5S, 16S)
partial rRNAs::5, 8 (16S, 23S)
tRNAs::47
ncRNAs::4
Pseudo Genes (total)::218
Pseudo Genes (ambiguous residues)::0 of 218
Pseudo Genes (frameshifted)::176 of 218
Pseudo Genes (incomplete)::41 of 218
Pseudo Genes (internal stop)::16 of 218
Pseudo Genes (multiple problems)::15 of 218
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,612,632
Total ungapped length2,611,945
Gaps between scaffolds0
Number of scaffolds100
Scaffold N5065,765
Scaffold L5015
Number of contigs101
Contig N5065,765
Contig L5015
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)100

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,612,6321002,611,94565,76510

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Eubacterium sp. AM49-13BHEubacterium sp. AM49-13BH

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000146185.1Lachnospira eligenssuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type94.2075.2069.38

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna