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ASM346417v1

Organism name:
Lachnospira eligens (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: AM48-8
BioSample:
SAMN09736610
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003464175.1 (latest)
RefSeq assembly accession:
GCF_003464175.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QSEM01
Assembly method:
SPAdes v. 3.1.0
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
IonProton

IDs: 1922471 [UID] 7293978 [GenBank] 7465778 [RefSeq]

See Genome Information for Lachnospira eligens

There are 116 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/04/2018 05:20:18
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,916
CDS (total)::2,861
Genes (coding)::2,603
CDS (coding)::2,603
Genes (RNA)::55
rRNAs::1, 3, 3 (5S, 16S, 23S)
complete rRNAs::1 (5S)
partial rRNAs::3, 3 (16S, 23S)
tRNAs::44
ncRNAs::4
Pseudo Genes (total)::258
Pseudo Genes (ambiguous residues)::0 of 258
Pseudo Genes (frameshifted)::191 of 258
Pseudo Genes (incomplete)::68 of 258
Pseudo Genes (internal stop)::11 of 258
Pseudo Genes (multiple problems)::12 of 258
CRISPR Arrays::5
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,945,989
Total ungapped length2,944,502
Gaps between scaffolds0
Number of scaffolds44
Scaffold N50150,859
Scaffold L505
Number of contigs46
Contig N50150,859
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)44

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,945,989442,944,502150,85920

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lachnospira eligensLachnospira eligens

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000146185.1[Eubacterium] eligens ATCC 27750suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000146185.1Lachnospira eligenssuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type94.9573.3676.29
Best-match type94.9573.3676.29

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna