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ASM346428v1

Organism name:
Limosilactobacillus fermentum (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: AF15-40LB
BioSample:
SAMN09734289
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003464285.1 (latest)
RefSeq assembly accession:
GCF_003464285.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QRYM01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1922531 [UID] 7294098 [GenBank] 7349158 [RefSeq]

See Genome Information for Limosilactobacillus fermentum

There are 341 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/04/2018 01:01:23
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,007
CDS (total)::1,947
Genes (coding)::1,829
CDS (coding)::1,829
Genes (RNA)::60
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::54
ncRNAs::3
Pseudo Genes (total)::118
Pseudo Genes (ambiguous residues)::0 of 118
Pseudo Genes (frameshifted)::35 of 118
Pseudo Genes (incomplete)::72 of 118
Pseudo Genes (internal stop)::25 of 118
Pseudo Genes (multiple problems)::14 of 118
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,968,193
Total ungapped length1,967,637
Gaps between scaffolds0
Number of scaffolds80
Scaffold N5062,108
Scaffold L5010
Number of contigs100
Contig N5055,235
Contig L5012
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)80

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,968,193801,967,63762,108200

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Limosilactobacillus fermentumLimosilactobacillus fermentum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_005341425.1Limosilactobacillus fermentumtype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_005341425.1Limosilactobacillus fermentumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.2586.1388.95
Best-match type99.2586.1388.95

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna