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ASM346469v1

Organism name:
Bacteroides thetaiotaomicron (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: AF14-20
BioSample:
SAMN09734252
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003464695.1 (latest)
RefSeq assembly accession:
GCF_003464695.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QRZK01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1922731 [UID] 7294498 [GenBank] 7349998 [RefSeq]

See Genome Information for Bacteroides thetaiotaomicron

There are 1125 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/04/2018 02:46:28
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,950
CDS (total)::4,883
Genes (coding)::4,737
CDS (coding)::4,737
Genes (RNA)::67
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::62
ncRNAs::2
Pseudo Genes (total)::146
Pseudo Genes (ambiguous residues)::4 of 146
Pseudo Genes (frameshifted)::64 of 146
Pseudo Genes (incomplete)::60 of 146
Pseudo Genes (internal stop)::47 of 146
Pseudo Genes (multiple problems)::24 of 146
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,186,877
Total ungapped length6,186,357
Gaps between scaffolds0
Number of scaffolds62
Scaffold N50299,930
Scaffold L506
Number of contigs77
Contig N50205,461
Contig L509
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)62

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,186,877626,186,357299,930150

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacteroides thetaiotaomicronBacteroides thetaiotaomicron

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000011065.1Bacteroides thetaiotaomicron VPI-5482type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000011065.1Bacteroides thetaiotaomicrontype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.3781.3679.98
Best-match type98.3781.3679.98

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna