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ASM346475v1

Organism name:
Escherichia coli (E. coli)
Taxonomy check:
OK
Infraspecific name:
Strain: AF14-15AC
BioSample:
SAMN09734248
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003464755.1 (latest)
RefSeq assembly accession:
GCF_003464755.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QRZN01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1922761 [UID] 7294558 [GenBank] 7350258 [RefSeq]

See Genome Information for Escherichia coli

There are 265830 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/04/2018 02:16:44
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,907
CDS (total)::4,821
Genes (coding)::4,533
CDS (coding)::4,533
Genes (RNA)::86
rRNAs::1, 1, 2 (5S, 16S, 23S)
complete rRNAs::1, 1 (5S, 16S)
partial rRNAs::2 (23S)
tRNAs::73
ncRNAs::9
Pseudo Genes (total)::288
Pseudo Genes (ambiguous residues)::6 of 288
Pseudo Genes (frameshifted)::99 of 288
Pseudo Genes (incomplete)::138 of 288
Pseudo Genes (internal stop)::76 of 288
Pseudo Genes (multiple problems)::29 of 288
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,729,977
Total ungapped length4,729,767
Gaps between scaffolds0
Number of scaffolds122
Scaffold N5096,809
Scaffold L5012
Number of contigs143
Contig N5096,809
Contig L5012
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)122

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,729,9771224,729,76796,809210

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Escherichia coliEscherichia coli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000210475.1Escherichia coli ETEC H10407claderef

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000210475.1Escherichia colicladeref

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.3688.4078.51
Best-match type99.3688.4078.51

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna