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ASM346478v1

Organism name:
Bacteroides uniformis (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: AF14-14
BioSample:
SAMN09734246
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003464785.1 (latest)
RefSeq assembly accession:
GCF_003464785.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QRZP01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1922781 [UID] 7294578 [GenBank] 7347878 [RefSeq]

See Genome Information for Bacteroides uniformis

There are 765 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/04/2018 02:59:28
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,931
CDS (total)::4,861
Genes (coding)::4,674
CDS (coding)::4,674
Genes (RNA)::70
rRNAs::2, 1, 1 (5S, 16S, 23S)
complete rRNAs::2, 1, 1 (5S, 16S, 23S)
tRNAs::63
ncRNAs::3
Pseudo Genes (total)::187
Pseudo Genes (ambiguous residues)::3 of 187
Pseudo Genes (frameshifted)::91 of 187
Pseudo Genes (incomplete)::90 of 187
Pseudo Genes (internal stop)::50 of 187
Pseudo Genes (multiple problems)::41 of 187
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,539,408
Total ungapped length5,538,908
Gaps between scaffolds0
Number of scaffolds100
Scaffold N50141,750
Scaffold L5010
Number of contigs128
Contig N50121,336
Contig L5013
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)100

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,539,4081005,538,908141,750280

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacteroides uniformisBacteroides uniformis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_025147485.1Bacteroides uniformissuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_025147485.1Bacteroides uniformissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.1165.7778.70
Best-match type98.1165.7778.70

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna