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Source database (GenBank or RefSeq) File type

ASM346481v1

Anomalous assembly.

Organism name:

Ruminococcus sp. AF14-10 (firmicutes)

Taxonomy check:

Inconclusive

Infraspecific name:

Strain: AF14-10

BioSample:

SAMN09734244

BioProject:

PRJNA482748

Submitter:

BGI

Date:

2018/09/06

Assembly type:

Assembly level:

Scaffold

Genome representation:

full

Assembly anomaly:

unverified source organism

Excluded from RefSeq:

unverified source organism

GenBank assembly accession:

GCA_003464815.1 (latest)

RefSeq assembly accession:

GCF_003464815.1 (suppressed)

RefSeq assembly and GenBank assembly identical:

yes

WGS Project:

QRZR01

Assembly method:

SOAPdenovo v. 2

Expected final version:

yes

Genome coverage:

100x

Sequencing technology:

Illumina Hiseq

IDs: 1922791 [UID] 7294618 [GenBank] 7348298 [RefSeq]

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_003464815.1	=	GCF_003464815.1	ASM346481v1	Scaffold	Latest GenBank, RefSeq suppressed

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::08/04/2018 02:21:42
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,009
CDS (total)::2,956
Genes (coding)::2,847
CDS (coding)::2,847
Genes (RNA)::53
rRNAs::2, 2 (16S, 23S)
partial rRNAs::2, 2 (16S, 23S)
tRNAs::45
ncRNAs::4
Pseudo Genes (total)::109
Pseudo Genes (ambiguous residues)::1 of 109
Pseudo Genes (frameshifted)::29 of 109
Pseudo Genes (incomplete)::74 of 109
Pseudo Genes (internal stop)::30 of 109
Pseudo Genes (multiple problems)::22 of 109
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	3,102,690
Total ungapped length	3,102,552
Gaps between scaffolds	0
Number of scaffolds	20
Scaffold N50	318,557
Scaffold L50	4
Number of contigs	25
Contig N50	318,557
Contig L50	4
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	20

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	98.34	77.14	78.87

Assembly

Genome Assembly

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ASM346481v1

Pathogen Detection Resources

History (Show revision history)

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Genome-Annotation-Data

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Taxonomy Check Data

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Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result