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ASM346486v1

  • Anomalous assembly.
Organism name:
Ruminococcus sp. AF13-37 (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: AF13-37
BioSample:
SAMN09734237
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Assembly anomaly:
contaminated
Excluded from RefSeq:
  • contaminated
GenBank assembly accession:
GCA_003464865.1 (latest)
RefSeq assembly accession:
GCF_003464865.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QRZX01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1922811 [UID] 7294668 [GenBank] 7348238 [RefSeq]

See Genome Information for Ruminococcus sp. AF13-37

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/04/2018 02:56:30
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,273
CDS (total)::4,209
Genes (coding)::3,935
CDS (coding)::3,935
Genes (RNA)::64
rRNAs::2, 1, 1 (5S, 16S, 23S)
complete rRNAs::2, 1, 1 (5S, 16S, 23S)
tRNAs::56
ncRNAs::4
Pseudo Genes (total)::274
Pseudo Genes (ambiguous residues)::15 of 274
Pseudo Genes (frameshifted)::77 of 274
Pseudo Genes (incomplete)::187 of 274
Pseudo Genes (internal stop)::31 of 274
Pseudo Genes (multiple problems)::34 of 274
CRISPR Arrays::4
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,501,857
Total ungapped length4,501,196
Gaps between scaffolds0
Number of scaffolds110
Scaffold N50107,045
Scaffold L5014
Number of contigs161
Contig N5096,146
Contig L5016
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)110

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,501,8571104,501,196107,045510

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Ruminococcus sp. AF13-37Ruminococcus sp. AF13-37

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_025148125.1Blautia wexleraesuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type91.8649.5347.59

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna