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ASM346509v1

Organism name:
Bifidobacterium longum (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: AF11-41
BioSample:
SAMN09734211
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003465095.1 (latest)
RefSeq assembly accession:
GCF_003465095.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QSAM01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1922911 [UID] 7294878 [GenBank] 7345458 [RefSeq]

See Genome Information for Bifidobacterium longum

There are 1641 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/04/2018 02:45:36
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,152
CDS (total)::2,074
Genes (coding)::1,948
CDS (coding)::1,948
Genes (RNA)::78
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::72
ncRNAs::3
Pseudo Genes (total)::126
Pseudo Genes (ambiguous residues)::5 of 126
Pseudo Genes (frameshifted)::58 of 126
Pseudo Genes (incomplete)::74 of 126
Pseudo Genes (internal stop)::11 of 126
Pseudo Genes (multiple problems)::20 of 126
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,383,621
Total ungapped length2,383,425
Gaps between scaffolds0
Number of scaffolds30
Scaffold N50291,556
Scaffold L504
Number of contigs40
Contig N50289,062
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)30

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,383,621302,383,425291,556100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bifidobacterium longumBifidobacterium longum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000196555.1Bifidobacterium longum subsp. longum JCM 1217type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000196555.1Bifidobacterium longumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.7488.0187.95
Best-match type98.7488.0187.95

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna