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ASM346533v1

Organism name:
Enterococcus asini (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: AF13-3-H
BioSample:
SAMN09734238
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003465335.1 (latest)
RefSeq assembly accession:
GCF_003465335.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QRZW01
Assembly method:
SPAdes v. 3.1.0
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
IonProton

IDs: 1923051 [UID] 7295138 [GenBank] 7357758 [RefSeq]

See Genome Information for Enterococcus asini

There are 17 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/04/2018 02:09:33
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,489
CDS (total)::2,425
Genes (coding)::2,093
CDS (coding)::2,093
Genes (RNA)::64
rRNAs::3, 3, 4 (5S, 16S, 23S)
complete rRNAs::3, 1, 1 (5S, 16S, 23S)
partial rRNAs::2, 3 (16S, 23S)
tRNAs::50
ncRNAs::4
Pseudo Genes (total)::332
Pseudo Genes (ambiguous residues)::0 of 332
Pseudo Genes (frameshifted)::306 of 332
Pseudo Genes (incomplete)::24 of 332
Pseudo Genes (internal stop)::10 of 332
Pseudo Genes (multiple problems)::8 of 332
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,560,730
Total ungapped length2,560,363
Gaps between scaffolds0
Number of scaffolds30
Scaffold N50264,102
Scaffold L504
Number of contigs31
Contig N50264,102
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)30

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,560,730302,560,363264,10210

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Enterococcus asiniEnterococcus asini

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000407365.1Enterococcus asini ATCC 700915type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000407365.1Enterococcus asinitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.0786.9786.55
Best-match type97.0786.9786.55

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna