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ASM346569v1

Organism name:
Phocaeicola vulgatus (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: AF04-25
BioSample:
SAMN09734180
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003465695.1 (latest)
RefSeq assembly accession:
GCF_003465695.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QSBJ01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1923251 [UID] 7295538 [GenBank] 7348978 [RefSeq]

See Genome Information for Phocaeicola vulgatus

There are 1480 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/04/2018 03:46:48
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,546
CDS (total)::4,461
Genes (coding)::4,225
CDS (coding)::4,225
Genes (RNA)::85
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::80
ncRNAs::2
Pseudo Genes (total)::236
Pseudo Genes (ambiguous residues)::7 of 236
Pseudo Genes (frameshifted)::117 of 236
Pseudo Genes (incomplete)::125 of 236
Pseudo Genes (internal stop)::40 of 236
Pseudo Genes (multiple problems)::43 of 236
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,180,448
Total ungapped length5,179,450
Gaps between scaffolds0
Number of scaffolds159
Scaffold N5070,061
Scaffold L5022
Number of contigs202
Contig N5053,220
Contig L5026
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)159

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,180,4481595,179,45070,061430

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Phocaeicola vulgatusPhocaeicola vulgatus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_028538915.1Phocaeicola vulgatus ATCC 8482suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_028538915.1Phocaeicola vulgatussuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.1076.5679.23
Best-match type99.1076.5679.23

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna