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ASM346583v1

Organism name:
Anaerotruncus sp. AF02-27 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: AF02-27
BioSample:
SAMN09734163
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003465835.1 (latest)
RefSeq assembly accession:
GCF_003465835.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QSBX01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1923301 [UID] 7295648 [GenBank] 7360698 [RefSeq]

See Genome Information for Anaerotruncus sp. AF02-27

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/04/2018 04:07:11
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,764
CDS (total)::3,707
Genes (coding)::3,623
CDS (coding)::3,623
Genes (RNA)::57
rRNAs::2, 1, 1 (5S, 16S, 23S)
complete rRNAs::2, 1, 1 (5S, 16S, 23S)
tRNAs::49
ncRNAs::4
Pseudo Genes (total)::84
Pseudo Genes (ambiguous residues)::17 of 84
Pseudo Genes (frameshifted)::28 of 84
Pseudo Genes (incomplete)::43 of 84
Pseudo Genes (internal stop)::9 of 84
Pseudo Genes (multiple problems)::11 of 84
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,740,042
Total ungapped length3,738,529
Gaps between scaffolds0
Number of scaffolds69
Scaffold N50141,322
Scaffold L509
Number of contigs120
Contig N5053,242
Contig L5021
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)69

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,740,042693,738,529141,322510

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Anaerotruncus sp. AF02-27Anaerotruncus sp. AF02-27

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900078395.1Anaerotruncus rubiinfantistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type99.3080.2688.03

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna