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Source database (GenBank or RefSeq) File type

ASM346612v1

Organism name:: Collinsella sp. TM10-22 (actinobacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: TM10-22
BioSample:: SAMN09737028
BioProject:: PRJNA482748
Submitter:: BGI
Date:: 2018/08/31
Assembly type:: na
Assembly level:: Scaffold
Genome representation:: full
GenBank assembly accession:: GCA_003466125.1 (latest)
RefSeq assembly accession:: GCF_003466125.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: QSOC01
Assembly method:: SOAPdenovo v. 2
Expected final version:: yes
Genome coverage:: 100x
Sequencing technology:: Illumina Hiseq

IDs: 1923441 [UID] 7295928 [GenBank] 7345258 [RefSeq]

See Genome Information for Collinsella sp. TM10-22

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_003466125.1	=	GCF_003466125.1	ASM346612v1	Scaffold	Latest GenBank, Latest RefSeq

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::08/06/2018 09:46:51
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,907
CDS (total)::1,846
Genes (coding)::1,803
CDS (coding)::1,803
Genes (RNA)::61
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::55
ncRNAs::3
Pseudo Genes (total)::43
Pseudo Genes (ambiguous residues)::2 of 43
Pseudo Genes (frameshifted)::10 of 43
Pseudo Genes (incomplete)::32 of 43
Pseudo Genes (internal stop)::6 of 43
Pseudo Genes (multiple problems)::7 of 43
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	2,162,763
Total ungapped length	2,162,733
Gaps between scaffolds	0
Number of scaffolds	23
Scaffold N50	318,614
Scaffold L50	3
Number of contigs	26
Contig N50	273,783
Contig L50	4
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	23

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	92.90	78.89	69.48

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ASM346612v1

See Genome Information for Collinsella sp. TM10-22

Pathogen Detection Resources

History (Show revision history)

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Genome-Annotation-Data

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