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ASM346613v1

Organism name:
Klebsiella pneumoniae (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: TM10-8AC
BioSample:
SAMN09737030
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/08/31
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003466135.1 (latest)
RefSeq assembly accession:
GCF_003466135.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QSOA01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1923451 [UID] 7295938 [GenBank] 7350118 [RefSeq]

See Genome Information for Klebsiella pneumoniae

There are 65265 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/06/2018 10:29:14
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,544
CDS (total)::5,454
Genes (coding)::5,280
CDS (coding)::5,280
Genes (RNA)::90
rRNAs::4, 1, 1 (5S, 16S, 23S)
complete rRNAs::4, 1, 1 (5S, 16S, 23S)
tRNAs::73
ncRNAs::11
Pseudo Genes (total)::174
Pseudo Genes (ambiguous residues)::3 of 174
Pseudo Genes (frameshifted)::90 of 174
Pseudo Genes (incomplete)::85 of 174
Pseudo Genes (internal stop)::42 of 174
Pseudo Genes (multiple problems)::43 of 174
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,511,749
Total ungapped length5,511,356
Gaps between scaffolds0
Number of scaffolds52
Scaffold N50350,100
Scaffold L507
Number of contigs71
Contig N50350,100
Contig L507
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)52

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,511,749525,511,356350,100190

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Klebsiella pneumoniaeKlebsiella pneumoniae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000788015.1Klebsiella pneumoniae subsp. pneumoniaetype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000788015.1Klebsiella pneumoniaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.2488.9585.62
Best-match type99.2488.9585.62

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna