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ASM346632v1

Organism name:
Bacteroides sp. 4_1_36 (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: TM07-1
BioSample:
SAMN09736999
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/08/31
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003466325.1 (latest)
RefSeq assembly accession:
GCF_003466325.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QSOX01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1923551 [UID] 7296138 [GenBank] 7348258 [RefSeq]

See Genome Information for Bacteroides sp. 4_1_36

There are 3 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/06/2018 10:56:33
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,179
CDS (total)::4,104
Genes (coding)::3,985
CDS (coding)::3,985
Genes (RNA)::75
rRNAs::2, 1, 2 (5S, 16S, 23S)
complete rRNAs::2, 1, 1 (5S, 16S, 23S)
partial rRNAs::1 (23S)
tRNAs::68
ncRNAs::2
Pseudo Genes (total)::119
Pseudo Genes (ambiguous residues)::5 of 119
Pseudo Genes (frameshifted)::51 of 119
Pseudo Genes (incomplete)::57 of 119
Pseudo Genes (internal stop)::19 of 119
Pseudo Genes (multiple problems)::13 of 119
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,777,078
Total ungapped length4,776,858
Gaps between scaffolds0
Number of scaffolds66
Scaffold N50193,003
Scaffold L509
Number of contigs88
Contig N50182,216
Contig L509
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)66

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,777,078664,776,858193,003220

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacteroides sp. 4_1_36Bacteroides sp. 4_1_36

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_016117815.1Bacteroides uniformissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type98.7480.2081.02

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna