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ASM346703v1

Organism name:
Roseburia intestinalis (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: AM43-11
BioSample:
SAMN09736561
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003467035.1 (latest)
RefSeq assembly accession:
GCF_003467035.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QSFP01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1923901 [UID] 7296838 [GenBank] 7362278 [RefSeq]

See Genome Information for Roseburia intestinalis

There are 88 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/04/2018 06:56:54
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,124
CDS (total)::4,061
Genes (coding)::3,894
CDS (coding)::3,894
Genes (RNA)::63
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1 (5S, 16S)
partial rRNAs::1 (23S)
tRNAs::55
ncRNAs::5
Pseudo Genes (total)::167
Pseudo Genes (ambiguous residues)::4 of 167
Pseudo Genes (frameshifted)::50 of 167
Pseudo Genes (incomplete)::110 of 167
Pseudo Genes (internal stop)::31 of 167
Pseudo Genes (multiple problems)::27 of 167
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,337,927
Total ungapped length4,337,028
Gaps between scaffolds0
Number of scaffolds91
Scaffold N50146,443
Scaffold L5010
Number of contigs127
Contig N50136,540
Contig L5010
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)91

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,337,927914,337,028146,443360

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Roseburia intestinalisRoseburia intestinalis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_025151715.1Roseburia intestinalissuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_025151715.1Roseburia intestinalissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.4179.1376.56
Best-match type98.4179.1376.56

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna