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ASM346706v1

Organism name:
Bifidobacterium pseudocatenulatum (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: AM43-10
BioSample:
SAMN09736560
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003467065.1 (latest)
RefSeq assembly accession:
GCF_003467065.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QSFQ01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1923911 [UID] 7296858 [GenBank] 7346038 [RefSeq]

See Genome Information for Bifidobacterium pseudocatenulatum

There are 509 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/04/2018 06:27:36
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,818
CDS (total)::1,756
Genes (coding)::1,685
CDS (coding)::1,685
Genes (RNA)::62
rRNAs::2, 1, 1 (5S, 16S, 23S)
complete rRNAs::2, 1, 1 (5S, 16S, 23S)
tRNAs::55
ncRNAs::3
Pseudo Genes (total)::71
Pseudo Genes (ambiguous residues)::0 of 71
Pseudo Genes (frameshifted)::30 of 71
Pseudo Genes (incomplete)::44 of 71
Pseudo Genes (internal stop)::14 of 71
Pseudo Genes (multiple problems)::13 of 71
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,198,965
Total ungapped length2,198,935
Gaps between scaffolds0
Number of scaffolds7
Scaffold N501,228,168
Scaffold L501
Number of contigs10
Contig N50651,961
Contig L502
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)7

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,198,96572,198,9351,228,16830

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bifidobacterium pseudocatenulatumBifidobacterium pseudocatenulatum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001025215.1Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001025215.1Bifidobacterium pseudocatenulatumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.0189.0384.61
Best-match type98.0189.0384.61

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna