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ASM346717v1

Organism name:
Dorea formicigenerans (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: AM42-8
BioSample:
SAMN09736558
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003467175.1 (latest)
RefSeq assembly accession:
GCF_003467175.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QSFS01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1923971 [UID] 7296978 [GenBank] 7358298 [RefSeq]

See Genome Information for Dorea formicigenerans

There are 91 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/04/2018 06:45:38
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,218
CDS (total)::3,164
Genes (coding)::3,016
CDS (coding)::3,016
Genes (RNA)::54
rRNAs::2, 1 (5S, 16S)
complete rRNAs::2, 1 (5S, 16S)
tRNAs::47
ncRNAs::4
Pseudo Genes (total)::148
Pseudo Genes (ambiguous residues)::4 of 148
Pseudo Genes (frameshifted)::40 of 148
Pseudo Genes (incomplete)::101 of 148
Pseudo Genes (internal stop)::24 of 148
Pseudo Genes (multiple problems)::20 of 148
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,352,156
Total ungapped length3,352,036
Gaps between scaffolds0
Number of scaffolds41
Scaffold N50156,256
Scaffold L507
Number of contigs53
Contig N50141,620
Contig L508
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)41

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,352,156413,352,036156,256120

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Dorea formicigeneransDorea formicigenerans

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_025150245.1Dorea formicigeneranssuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_025150245.1Dorea formicigeneranssuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.0171.5975.27
Best-match type98.0171.5975.27

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna