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ASM346740v1

Organism name:
Dorea formicigenerans (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: AM40-15AC
BioSample:
SAMN09736519
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003467405.1 (latest)
RefSeq assembly accession:
GCF_003467405.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QSGQ01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1924091 [UID] 7297218 [GenBank] 7350498 [RefSeq]

See Genome Information for Dorea formicigenerans

There are 91 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/04/2018 07:41:54
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,030
CDS (total)::2,964
Genes (coding)::2,830
CDS (coding)::2,830
Genes (RNA)::66
rRNAs::2, 2, 1 (5S, 16S, 23S)
complete rRNAs::2, 1, 1 (5S, 16S, 23S)
partial rRNAs::1 (16S)
tRNAs::57
ncRNAs::4
Pseudo Genes (total)::134
Pseudo Genes (ambiguous residues)::3 of 134
Pseudo Genes (frameshifted)::33 of 134
Pseudo Genes (incomplete)::95 of 134
Pseudo Genes (internal stop)::21 of 134
Pseudo Genes (multiple problems)::15 of 134
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,098,547
Total ungapped length3,098,397
Gaps between scaffolds0
Number of scaffolds28
Scaffold N50278,000
Scaffold L504
Number of contigs43
Contig N50191,608
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)28

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,098,547283,098,397278,000150

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Dorea formicigeneransDorea formicigenerans

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000169235.1Dorea formicigenerans ATCC 27755suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000169235.1Dorea formicigeneranssuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.6776.3874.28
Best-match type97.6776.3874.28

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna