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ASM346814v1

Organism name:
Bacteroides fragilis (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: AM40-4AC
BioSample:
SAMN09736525
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003468145.1 (latest)
RefSeq assembly accession:
GCF_003468145.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QSGL01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1924451 [UID] 7297938 [GenBank] 7666408 [RefSeq]

See Genome Information for Bacteroides fragilis

There are 1152 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/04/2018 08:11:44
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,627
CDS (total)::4,556
Genes (coding)::4,400
CDS (coding)::4,400
Genes (RNA)::71
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::66
ncRNAs::2
Pseudo Genes (total)::156
Pseudo Genes (ambiguous residues)::6 of 156
Pseudo Genes (frameshifted)::80 of 156
Pseudo Genes (incomplete)::58 of 156
Pseudo Genes (internal stop)::42 of 156
Pseudo Genes (multiple problems)::27 of 156
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,165,672
Total ungapped length5,165,350
Gaps between scaffolds0
Number of scaffolds70
Scaffold N50236,153
Scaffold L508
Number of contigs101
Contig N50189,480
Contig L509
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)70

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,165,672705,165,350236,153310

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacteroides fragilisBacteroides fragilis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000025985.1Bacteroides fragilis NCTC 9343type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000025985.1Bacteroides fragilistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.4089.5088.20
Best-match type99.4089.5088.20

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna