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ASM346822v1

Organism name:
[Clostridium] symbiosum (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: AM39-1BH
BioSample:
SAMN09736511
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003468225.1 (latest)
RefSeq assembly accession:
GCF_003468225.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QSGW01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1924491 [UID] 7298028 [GenBank] 7350618 [RefSeq]

See Genome Information for [Clostridium] symbiosum

There are 77 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/04/2018 08:07:06
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,387
CDS (total)::4,319
Genes (coding)::4,104
CDS (coding)::4,104
Genes (RNA)::68
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::61
ncRNAs::4
Pseudo Genes (total)::215
Pseudo Genes (ambiguous residues)::8 of 215
Pseudo Genes (frameshifted)::120 of 215
Pseudo Genes (incomplete)::97 of 215
Pseudo Genes (internal stop)::61 of 215
Pseudo Genes (multiple problems)::62 of 215
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,767,382
Total ungapped length4,766,670
Gaps between scaffolds0
Number of scaffolds116
Scaffold N5073,944
Scaffold L5018
Number of contigs149
Contig N5061,007
Contig L5020
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)116

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,767,3821164,766,67073,944330

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
[Clostridium] symbiosum[Clostridium] symbiosum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000466485.1[Clostridium] symbiosum ATCC 14940type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000466485.1[Clostridium] symbiosumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.2486.8186.02
Best-match type99.2486.8186.02

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna