U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM346823v1

Organism name:
Hungatella hathewayi (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: AM39-16AC
BioSample:
SAMN09736510
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003468235.1 (latest)
RefSeq assembly accession:
GCF_003468235.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QSGX01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1924501 [UID] 7298038 [GenBank] 7352158 [RefSeq]

See Genome Information for Hungatella hathewayi

There are 63 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/04/2018 08:32:05
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::6,498
CDS (total)::6,428
Genes (coding)::6,215
CDS (coding)::6,215
Genes (RNA)::70
rRNAs::1, 1 (16S, 23S)
complete rRNAs::1, 1 (16S, 23S)
tRNAs::64
ncRNAs::4
Pseudo Genes (total)::213
Pseudo Genes (ambiguous residues)::10 of 213
Pseudo Genes (frameshifted)::77 of 213
Pseudo Genes (incomplete)::119 of 213
Pseudo Genes (internal stop)::47 of 213
Pseudo Genes (multiple problems)::34 of 213
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,048,369
Total ungapped length7,048,009
Gaps between scaffolds0
Number of scaffolds119
Scaffold N50152,275
Scaffold L5015
Number of contigs153
Contig N50140,153
Contig L5017
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)119

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,048,3691197,048,009152,275340

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Hungatella hathewayiHungatella hathewayi

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_025149285.1Hungatella hathewayisuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_025149285.1Hungatella hathewayisuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.6588.1689.64
Best-match type99.6588.1689.64

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna