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ASM346829v1

Organism name:
Phocaeicola vulgatus (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: AM39-10
BioSample:
SAMN09736508
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003468295.1 (latest)
RefSeq assembly accession:
GCF_003468295.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QSGZ01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1924531 [UID] 7298118 [GenBank] 7347638 [RefSeq]

See Genome Information for Phocaeicola vulgatus

There are 1480 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/04/2018 08:17:36
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,960
CDS (total)::3,888
Genes (coding)::3,726
CDS (coding)::3,726
Genes (RNA)::72
rRNAs::3, 1, 1 (5S, 16S, 23S)
complete rRNAs::3, 1, 1 (5S, 16S, 23S)
tRNAs::65
ncRNAs::2
Pseudo Genes (total)::162
Pseudo Genes (ambiguous residues)::5 of 162
Pseudo Genes (frameshifted)::92 of 162
Pseudo Genes (incomplete)::74 of 162
Pseudo Genes (internal stop)::43 of 162
Pseudo Genes (multiple problems)::43 of 162
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,712,457
Total ungapped length4,712,125
Gaps between scaffolds0
Number of scaffolds104
Scaffold N50112,294
Scaffold L5014
Number of contigs128
Contig N50110,625
Contig L5016
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)104

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,712,4571044,712,125112,294240

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Phocaeicola vulgatusPhocaeicola vulgatus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_028538915.1Phocaeicola vulgatus ATCC 8482suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_028538915.1Phocaeicola vulgatussuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.2882.6777.84
Best-match type99.2882.6777.84

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna