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ASM346868v1

Organism name:
Bacteroides stercoris (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: AM32-16LB
BioSample:
SAMN09736438
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003468685.1 (latest)
RefSeq assembly accession:
GCF_003468685.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QSIW01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1924721 [UID] 7298568 [GenBank] 7352358 [RefSeq]

See Genome Information for Bacteroides stercoris

There are 202 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/04/2018 09:56:57
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,364
CDS (total)::3,304
Genes (coding)::3,179
CDS (coding)::3,179
Genes (RNA)::60
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::54
ncRNAs::3
Pseudo Genes (total)::125
Pseudo Genes (ambiguous residues)::8 of 125
Pseudo Genes (frameshifted)::61 of 125
Pseudo Genes (incomplete)::59 of 125
Pseudo Genes (internal stop)::31 of 125
Pseudo Genes (multiple problems)::29 of 125
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,995,062
Total ungapped length3,994,252
Gaps between scaffolds0
Number of scaffolds111
Scaffold N5063,688
Scaffold L5017
Number of contigs144
Contig N5060,688
Contig L5019
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)111

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,995,0621113,994,25263,688330

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacteroides stercorisBacteroides stercoris

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000154525.1Bacteroides stercoris ATCC 43183suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000154525.1Bacteroides stercorissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.3175.9775.69
Best-match type98.3175.9775.69

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna