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ASM346878v1

Organism name:
Bacteroides caccae (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: AM31-16AC
BioSample:
SAMN09736428
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003468785.1 (latest)
RefSeq assembly accession:
GCF_003468785.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QSJD01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1924771 [UID] 7298658 [GenBank] 7668068 [RefSeq]

See Genome Information for Bacteroides caccae

There are 190 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/04/2018 10:05:39
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,540
CDS (total)::4,476
Genes (coding)::4,252
CDS (coding)::4,252
Genes (RNA)::64
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::58
ncRNAs::3
Pseudo Genes (total)::224
Pseudo Genes (ambiguous residues)::15 of 224
Pseudo Genes (frameshifted)::110 of 224
Pseudo Genes (incomplete)::121 of 224
Pseudo Genes (internal stop)::58 of 224
Pseudo Genes (multiple problems)::64 of 224
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,342,761
Total ungapped length5,341,741
Gaps between scaffolds0
Number of scaffolds104
Scaffold N50109,033
Scaffold L5015
Number of contigs152
Contig N50105,060
Contig L5016
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)104

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,342,7611045,341,741109,033480

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacteroides caccaeBacteroides caccae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000169015.1Bacteroides caccae ATCC 43185type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000169015.1Bacteroides caccaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.2874.7287.45
Best-match type99.2874.7287.45

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna