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ASM346903v1

Organism name:
Phocaeicola vulgatus (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: AM29-2
BioSample:
SAMN09736399
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003469035.1 (latest)
RefSeq assembly accession:
GCF_003469035.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QSJX01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1924901 [UID] 7298928 [GenBank] 7423448 [RefSeq]

See Genome Information for Phocaeicola vulgatus

There are 1480 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/04/2018 10:19:40
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,993
CDS (total)::3,924
Genes (coding)::3,752
CDS (coding)::3,752
Genes (RNA)::69
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::63
ncRNAs::3
Pseudo Genes (total)::172
Pseudo Genes (ambiguous residues)::8 of 172
Pseudo Genes (frameshifted)::104 of 172
Pseudo Genes (incomplete)::69 of 172
Pseudo Genes (internal stop)::37 of 172
Pseudo Genes (multiple problems)::39 of 172
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,774,296
Total ungapped length4,774,016
Gaps between scaffolds0
Number of scaffolds107
Scaffold N50102,564
Scaffold L5015
Number of contigs135
Contig N50100,476
Contig L5015
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)107

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,774,2961074,774,016102,564280

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Phocaeicola vulgatusPhocaeicola vulgatus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000012825.1Phocaeicola vulgatus ATCC 8482suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000012825.1Phocaeicola vulgatussuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.1782.5176.30
Best-match type99.1782.5176.30

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna