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ASM346968v1

Organism name:
Bacteroides thetaiotaomicron (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: AM26-17LB
BioSample:
SAMN09736331
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003469685.1 (latest)
RefSeq assembly accession:
GCF_003469685.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QSLC01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1925221 [UID] 7299558 [GenBank] 7354418 [RefSeq]

See Genome Information for Bacteroides thetaiotaomicron

There are 1125 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/04/2018 12:12:13
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,644
CDS (total)::4,573
Genes (coding)::4,446
CDS (coding)::4,446
Genes (RNA)::71
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::66
ncRNAs::2
Pseudo Genes (total)::127
Pseudo Genes (ambiguous residues)::3 of 127
Pseudo Genes (frameshifted)::51 of 127
Pseudo Genes (incomplete)::50 of 127
Pseudo Genes (internal stop)::47 of 127
Pseudo Genes (multiple problems)::19 of 127
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,892,252
Total ungapped length5,892,028
Gaps between scaffolds0
Number of scaffolds46
Scaffold N50404,662
Scaffold L505
Number of contigs57
Contig N50362,883
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)46

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,892,252465,892,028404,662110

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacteroides thetaiotaomicronBacteroides thetaiotaomicron

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000011065.1Bacteroides thetaiotaomicron VPI-5482type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000011065.1Bacteroides thetaiotaomicrontype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.3985.1779.73
Best-match type98.3985.1779.73

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna