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ASM346981v1

  • Anomalous assembly.
Organism name:
Eubacterium sp. AM28-29 (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: AM28-29
BioSample:
SAMN09736378
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Assembly anomaly:
contaminated, unverified source organism
Excluded from RefSeq:
  • contaminated
  • unverified source organism
GenBank assembly accession:
GCA_003469815.1 (latest)
RefSeq assembly accession:
GCF_003469815.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QSKE01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1925301 [UID] 7299698 [GenBank] 7352978 [RefSeq]

See Genome Information for Eubacterium sp. AM28-29

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/04/2018 10:21:54
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,582
CDS (total)::2,526
Genes (coding)::2,422
CDS (coding)::2,422
Genes (RNA)::56
rRNAs::1, 2, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::1 (16S)
tRNAs::49
ncRNAs::3
Pseudo Genes (total)::104
Pseudo Genes (ambiguous residues)::22 of 104
Pseudo Genes (frameshifted)::29 of 104
Pseudo Genes (incomplete)::37 of 104
Pseudo Genes (internal stop)::25 of 104
Pseudo Genes (multiple problems)::9 of 104
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,516,774
Total ungapped length2,515,106
Gaps between scaffolds0
Number of scaffolds203
Scaffold N5027,280
Scaffold L5027
Number of contigs287
Contig N5025,046
Contig L5030
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)203

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,516,7742032,515,10627,280840

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Eubacterium sp. AM28-29Eubacterium sp. AM28-29

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_009696075.1Holdemanella porcisuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type96.7966.0180.22

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchcoverage is less than 80%