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ASM346984v1

Organism name:
Blautia obeum (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: AM28-23
BioSample:
SAMN09736374
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003469845.1 (latest)
RefSeq assembly accession:
GCF_003469845.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QSKF01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1925311 [UID] 7299738 [GenBank] 7351578 [RefSeq]

See Genome Information for Blautia obeum

There are 119 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/04/2018 10:45:05
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,567
CDS (total)::3,516
Genes (coding)::3,317
CDS (coding)::3,317
Genes (RNA)::51
rRNAs::2 (16S)
partial rRNAs::2 (16S)
tRNAs::46
ncRNAs::3
Pseudo Genes (total)::199
Pseudo Genes (ambiguous residues)::8 of 199
Pseudo Genes (frameshifted)::56 of 199
Pseudo Genes (incomplete)::139 of 199
Pseudo Genes (internal stop)::27 of 199
Pseudo Genes (multiple problems)::29 of 199
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,617,583
Total ungapped length3,616,950
Gaps between scaffolds0
Number of scaffolds47
Scaffold N50247,719
Scaffold L506
Number of contigs91
Contig N50174,361
Contig L507
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)47

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,617,583473,616,950247,719440

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Blautia obeumBlautia obeum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_025147765.1Blautia obeum ATCC 29174suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014297355.1Blautia intestinalistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type86.6442.1541.78
Best-match type98.8777.4480.45

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchcoverage is less than 80%