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ASM346991v1

Organism name:
Streptococcus gordonii (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: AM27-4
BioSample:
SAMN09736360
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003469915.1 (latest)
RefSeq assembly accession:
GCF_003469915.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QSKN01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1925331 [UID] 7299778 [GenBank] 7352838 [RefSeq]

See Genome Information for Streptococcus gordonii

There are 112 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/04/2018 10:23:08
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,160
CDS (total)::2,109
Genes (coding)::2,046
CDS (coding)::2,046
Genes (RNA)::51
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::45
ncRNAs::3
Pseudo Genes (total)::63
Pseudo Genes (ambiguous residues)::1 of 63
Pseudo Genes (frameshifted)::21 of 63
Pseudo Genes (incomplete)::32 of 63
Pseudo Genes (internal stop)::22 of 63
Pseudo Genes (multiple problems)::11 of 63
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,231,694
Total ungapped length2,231,506
Gaps between scaffolds0
Number of scaffolds11
Scaffold N50425,046
Scaffold L503
Number of contigs14
Contig N50398,469
Contig L503
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)11

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,231,694112,231,506425,04630

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptococcus gordoniiStreptococcus gordonii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_019046945.1Streptococcus gordoniitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_019046945.1Streptococcus gordoniitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type95.4285.9887.71
Best-match type95.4285.9887.71

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna