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Source database (GenBank or RefSeq) File type

ASM347012v1

Organism name:: Bifidobacterium pseudocatenulatum (high G+C Gram-positive bacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: AM26-14LB
BioSample:: SAMN09736330
BioProject:: PRJNA482748
Submitter:: BGI
Date:: 2018/09/06
Assembly type:: na
Assembly level:: Scaffold
Genome representation:: full
GenBank assembly accession:: GCA_003470125.1 (latest)
RefSeq assembly accession:: GCF_003470125.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: QSLD01
Assembly method:: SOAPdenovo v. 2
Expected final version:: yes
Genome coverage:: 100x
Sequencing technology:: Illumina Hiseq

IDs: 1925441 [UID] 7299998 [GenBank] 7353678 [RefSeq]

See Genome Information for Bifidobacterium pseudocatenulatum

Pathogen Detection Resources

There are 509 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_003470125.1	=	GCF_003470125.1	ASM347012v1	Scaffold	Latest GenBank, Latest RefSeq

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::08/04/2018 11:02:14
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,855
CDS (total)::1,795
Genes (coding)::1,730
CDS (coding)::1,730
Genes (RNA)::60
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::54
ncRNAs::3
Pseudo Genes (total)::65
Pseudo Genes (ambiguous residues)::0 of 65
Pseudo Genes (frameshifted)::26 of 65
Pseudo Genes (incomplete)::42 of 65
Pseudo Genes (internal stop)::12 of 65
Pseudo Genes (multiple problems)::14 of 65
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	2,218,563
Total ungapped length	2,218,541
Gaps between scaffolds	0
Number of scaffolds	13
Scaffold N50	667,772
Scaffold L50	2
Number of contigs	15
Contig N50	667,772
Contig L50	2
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	13

	ANI	Query coverage	Subject coverage
Declared type	98.10	90.40	87.02
Best-match type	98.10	90.40	87.02

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ASM347012v1

See Genome Information for Bifidobacterium pseudocatenulatum

Pathogen Detection Resources

There are 509 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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