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ASM347050v1

Organism name:
Escherichia coli (E. coli)
Taxonomy check:
OK
Infraspecific name:
Strain: AM20-38
BioSample:
SAMN09734883
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003470505.1 (latest)
RefSeq assembly accession:
GCF_003470505.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QRIX01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1925641 [UID] 7300398 [GenBank] 7355698 [RefSeq]

See Genome Information for Escherichia coli

There are 265830 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/03/2018 14:10:11
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,509
CDS (total)::5,441
Genes (coding)::5,155
CDS (coding)::5,155
Genes (RNA)::68
rRNAs::2, 1, 1 (5S, 16S, 23S)
complete rRNAs::2, 1, 1 (5S, 16S, 23S)
tRNAs::58
ncRNAs::6
Pseudo Genes (total)::286
Pseudo Genes (ambiguous residues)::16 of 286
Pseudo Genes (frameshifted)::143 of 286
Pseudo Genes (incomplete)::108 of 286
Pseudo Genes (internal stop)::76 of 286
Pseudo Genes (multiple problems)::51 of 286
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,283,769
Total ungapped length5,283,310
Gaps between scaffolds0
Number of scaffolds109
Scaffold N50328,640
Scaffold L507
Number of contigs149
Contig N50270,706
Contig L509
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)109

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,283,7691095,283,310328,640400

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Escherichia coliEscherichia coli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000013265.1Escherichia coli UTI89claderef

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000013265.1Escherichia colicladeref

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.0789.7291.51
Best-match type99.0789.7291.51

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna