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ASM347060v1

  • Anomalous assembly.
Organism name:
Desulfovibrio sp. AM18-2 (bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: AM18-2
BioSample:
SAMN09734866
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Assembly anomaly:
contaminated
Excluded from RefSeq:
  • contaminated
GenBank assembly accession:
GCA_003470605.1 (latest)
RefSeq assembly accession:
GCF_003470605.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QRJJ01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1925681 [UID] 7300488 [GenBank] 7354958 [RefSeq]

See Genome Information for Desulfovibrio sp. AM18-2

Pathogen Detection Resources

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/03/2018 14:17:46
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,333
CDS (total)::2,279
Genes (coding)::2,229
CDS (coding)::2,229
Genes (RNA)::54
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::46
ncRNAs::5
Pseudo Genes (total)::50
Pseudo Genes (ambiguous residues)::6 of 50
Pseudo Genes (frameshifted)::10 of 50
Pseudo Genes (incomplete)::38 of 50
Pseudo Genes (internal stop)::3 of 50
Pseudo Genes (multiple problems)::5 of 50
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,655,841
Total ungapped length2,654,498
Gaps between scaffolds0
Number of scaffolds51
Scaffold N50117,983
Scaffold L507
Number of contigs73
Contig N5078,220
Contig L509
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)51

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced2,655,841512,654,498117,983220

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Desulfovibrio sp. AM18-2Desulfovibrio sp. AM18-2

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_004309735.1Desulfovibrio legalliitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type99.7393.5792.86

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna