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ASM347082v1

Organism name:
Dorea formicigenerans (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: AM23-7AC
BioSample:
SAMN09736292
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003470825.1 (latest)
RefSeq assembly accession:
GCF_003470825.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QRHN01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1925791 [UID] 7300698 [GenBank] 7355258 [RefSeq]

See Genome Information for Dorea formicigenerans

There are 91 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/03/2018 12:04:45
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,040
CDS (total)::2,985
Genes (coding)::2,842
CDS (coding)::2,842
Genes (RNA)::55
rRNAs::1, 1, 2 (5S, 16S, 23S)
complete rRNAs::1, 1 (5S, 23S)
partial rRNAs::1, 1 (16S, 23S)
tRNAs::47
ncRNAs::4
Pseudo Genes (total)::143
Pseudo Genes (ambiguous residues)::6 of 143
Pseudo Genes (frameshifted)::25 of 143
Pseudo Genes (incomplete)::111 of 143
Pseudo Genes (internal stop)::15 of 143
Pseudo Genes (multiple problems)::14 of 143
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,136,321
Total ungapped length3,136,151
Gaps between scaffolds0
Number of scaffolds52
Scaffold N50119,300
Scaffold L508
Number of contigs69
Contig N50112,055
Contig L509
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)52

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,136,321523,136,151119,300170

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Dorea formicigeneransDorea formicigenerans

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_025150245.1Dorea formicigeneranssuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_025150245.1Dorea formicigeneranssuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.0077.0675.80
Best-match type98.0077.0675.80

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna