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ASM347084v1

Organism name:
Eubacterium ventriosum (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: AM23-22
BioSample:
SAMN09736286
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003470845.1 (latest)
RefSeq assembly accession:
GCF_003470845.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QRHR01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1925811 [UID] 7300738 [GenBank] 7354998 [RefSeq]

See Genome Information for Eubacterium ventriosum

There are 53 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/03/2018 13:08:10
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,275
CDS (total)::2,221
Genes (coding)::2,175
CDS (coding)::2,175
Genes (RNA)::54
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::47
ncRNAs::4
Pseudo Genes (total)::46
Pseudo Genes (ambiguous residues)::1 of 46
Pseudo Genes (frameshifted)::8 of 46
Pseudo Genes (incomplete)::32 of 46
Pseudo Genes (internal stop)::12 of 46
Pseudo Genes (multiple problems)::7 of 46
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,511,609
Total ungapped length2,511,506
Gaps between scaffolds0
Number of scaffolds22
Scaffold N50277,570
Scaffold L504
Number of contigs27
Contig N50213,703
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)22

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,511,609222,511,506277,57050

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Eubacterium ventriosumEubacterium ventriosum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000153885.1Eubacterium ventriosum ATCC 27560suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000153885.1Eubacterium ventriosumsuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.2782.4272.14
Best-match type98.2782.4272.14

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna