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ASM347094v1

Organism name:
Collinsella sp. AM23-17 (actinobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: AM23-17
BioSample:
SAMN09736279
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003470945.1 (latest)
RefSeq assembly accession:
GCF_003470945.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QRHU01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1925841 [UID] 7300808 [GenBank] 7354898 [RefSeq]

See Genome Information for Collinsella sp. AM23-17

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/03/2018 13:19:00
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,972
CDS (total)::1,910
Genes (coding)::1,881
CDS (coding)::1,881
Genes (RNA)::62
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::56
ncRNAs::3
Pseudo Genes (total)::29
Pseudo Genes (ambiguous residues)::3 of 29
Pseudo Genes (frameshifted)::6 of 29
Pseudo Genes (incomplete)::19 of 29
Pseudo Genes (internal stop)::3 of 29
Pseudo Genes (multiple problems)::2 of 29
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,264,918
Total ungapped length2,264,351
Gaps between scaffolds0
Number of scaffolds61
Scaffold N5091,166
Scaffold L509
Number of contigs80
Contig N5071,952
Contig L5010
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)61

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,264,918612,264,35191,166190

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Collinsella sp. AM23-17Collinsella sp. AM23-17

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_010509075.1Collinsella aerofacienstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type93.2880.4074.15

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna