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ASM347119v1

Organism name:
Segatella copri (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: AM22-1
BioSample:
SAMN09734897
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003471195.1 (latest)
RefSeq assembly accession:
GCF_003471195.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QRIN01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1925981 [UID] 7301078 [GenBank] 7354398 [RefSeq]

See Genome Information for Segatella copri

There are 498 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/03/2018 14:25:31
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,287
CDS (total)::3,206
Genes (coding)::3,070
CDS (coding)::3,070
Genes (RNA)::81
rRNAs::4, 1, 3 (5S, 16S, 23S)
complete rRNAs::4, 1, 1 (5S, 16S, 23S)
partial rRNAs::2 (23S)
tRNAs::71
ncRNAs::2
Pseudo Genes (total)::136
Pseudo Genes (ambiguous residues)::19 of 136
Pseudo Genes (frameshifted)::37 of 136
Pseudo Genes (incomplete)::81 of 136
Pseudo Genes (internal stop)::16 of 136
Pseudo Genes (multiple problems)::17 of 136
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,756,228
Total ungapped length3,755,376
Gaps between scaffolds0
Number of scaffolds185
Scaffold N5047,128
Scaffold L5027
Number of contigs231
Contig N5043,861
Contig L5028
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)185

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,756,2281853,755,37647,128460

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Segatella copriSegatella copri

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_009495405.1Segatella copri DSM 18205suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_009495405.1Segatella coprisuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type96.7064.0971.13
Best-match type96.7064.0971.13

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna