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ASM347144v1

  • Anomalous assembly.
Organism name:
Sutterella sp. AM18-8-1 (b-proteobacteria)
Taxonomy check:
Failed
Infraspecific name:
Strain: AM18-8-1
BioSample:
SAMN09734876
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Assembly anomaly:
unverified source organism
Excluded from RefSeq:
  • unverified source organism
GenBank assembly accession:
GCA_003471445.1 (latest)
RefSeq assembly accession:
GCF_003471445.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QRJD01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1926101 [UID] 7301318 [GenBank] 7355858 [RefSeq]

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/03/2018 13:39:16
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,235
CDS (total)::2,177
Genes (coding)::2,157
CDS (coding)::2,157
Genes (RNA)::58
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::52
ncRNAs::3
Pseudo Genes (total)::20
Pseudo Genes (ambiguous residues)::8 of 20
Pseudo Genes (frameshifted)::1 of 20
Pseudo Genes (incomplete)::9 of 20
Pseudo Genes (internal stop)::2 of 20
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,490,012
Total ungapped length2,489,766
Gaps between scaffolds0
Number of scaffolds95
Scaffold N5061,929
Scaffold L5014
Number of contigs111
Contig N5061,929
Contig L5014
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)95

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,490,012952,489,76661,929160

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Sutterella sp. AM18-8-1Sutterella sp. AM18-8-1

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003402575.1Mesosutterella multiformistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type99.2892.5587.89

ANI result

Taxonomy check statusBest match statusComment
Failedmismatchna