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ASM347146v1

Organism name:
Bacteroides fragilis (CFB group bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: AM18-6
BioSample:
SAMN09734875
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003471465.1 (latest)
RefSeq assembly accession:
GCF_003471465.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QRJE01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1926111 [UID] 7301338 [GenBank] 7669728 [RefSeq]

See Genome Information for Bacteroides fragilis

There are 1152 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/03/2018 14:37:40
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,012
CDS (total)::4,948
Genes (coding)::4,686
CDS (coding)::4,686
Genes (RNA)::64
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::59
ncRNAs::2
Pseudo Genes (total)::262
Pseudo Genes (ambiguous residues)::15 of 262
Pseudo Genes (frameshifted)::122 of 262
Pseudo Genes (incomplete)::113 of 262
Pseudo Genes (internal stop)::86 of 262
Pseudo Genes (multiple problems)::65 of 262
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,646,286
Total ungapped length5,645,399
Gaps between scaffolds0
Number of scaffolds106
Scaffold N50116,958
Scaffold L5018
Number of contigs156
Contig N5096,350
Contig L5019
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)106

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,646,2861065,645,399116,958500

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacteroides fragilisBacteroides fragilis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000025985.1Bacteroides fragilis NCTC 9343type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014288095.1Bacteroides hominis (ex Liu et al. 2022)suspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type88.1567.0572.22
Best-match type98.7475.1883.24

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchcoverage is less than 80%